Research Team Member
Principal Investigator
Dr. Yu Lin
Senior Lecturer
School of Computing
The Australian National University
Email: yu.lin AT anu.edu.au
Ph.D. STUDENTS
Ph.D. Student (Aug. 2017 - Feb. 2022)
Prior to ANU: Chinese Academy of Sciences
now at Shenzhen Institutes of Advanced Technology (SIAT), CAS
Research Interests: Graph models and reference-free haplotype assembly
Ph.D. Student (Aug. 2018 - Feb. 2022)
Prior to ANU: University of Moratuwa
now at CSIRO
Research Interests: Metagenomic analysis and assembly of long and error-prone reads
Ph.D. Student (Aug. 2018 - Feb. 2022)
Prior to ANU: University of Moratuwa
now at
Flinders University
Research Interests: Binning metagenomic sequences using assembly graphs
Visiting Ph.D. Student (Sep. 2019 - Sep. 2020)
Prior to ANU: Shandong University
now at Qingdao University
Research Interests: Models and algorithms in de novo transcriptome assembly
Ph.D. Student (Sep. 2019 - )
Prior to ANU: Harbin Institute of Technology
Research Interests: Representation Learning over Graphs in Genome
Ph.D. Student (July 2021 - )
Prior to ANU: BUPT
now at ASX
Research Topic: Network Embedding
MASTER STUDENTS
Beilei Wang
Master Student (2018 - 2019)
Thesis: K-mer properties and their applications for the human Y Chromosome
now at SeeingMachines
Yu Zhang
Master Student (2018 - 2019)
Thesis: A new algorithm for partitioning model selection in phylogenetic inference (development of the IQ-Tree software)
now at ThoughtWorks
Jiajia Xu
Master Student (2019)
Thesis: Calling genetic variants from both short and long reads
now Master student at ANU
Jinghang Feng
Master Student (2022)
Thesis: Machine learning method applied on long-reads on extended meta-barcodes
UNDERGRADUATE STUDENTS
Qiuyue Wang
Undergraduate Student (2018 - 2019)
Thesis: Benchmarking and comparing software for phylogenetic analysis from genome-scale data
now Master student at ANU
Yuting Zou
Undergraduate Student (2018-2019)
Thesis: Genome profiling for third-generation metagenomic sequencing
now Master student at ANU
Xinlu Dong
Undergraduate Student (2018 - 2019)
Thesis: K-mer composition and comparison for inferring heterozygosity in genomes
now Master student at ANU
Boyu Zhang
Undergraduate Student (2017 - 2018)
Thesis: Spatial-temporal evolution of communities in large networks
now Master student at University of Southern California
Muduo Lei
Undergraduate Student (2017 - 2018)
Thesis: An Integrated Learning Platform based on Knowledge Graphs
now at ThinkCaddie
Hao Zhang
Undergraduate Student (2017)
Thesis: Community based shortest-path distance queries on large networks by pruned landmark labelling
now at Atlassian
Runpeng Luo
Undergraduate Student (2022)
Thesis: De Novo Reconstruction of Viral Strains From Assembly Graphs
Wei Zhou
Undergraduate Student (2022)
Thesis: Metagenomic Binning via Graph Representation Learning and Clustering
Fenghua Chen
Undergraduate Student (2022)
Thesis: Temporal Graph Representation Learning
now at The University of Hong Kong