Publications

GraphBin: Refined Binning of Metagenomic Contigs using Assembly Graphs

Vijini Mallawaarachchi, Anuradha Wickramarachchi, and Yu Lin

Bioinformatics, btaa180, https://doi.org/10.1093/bioinformatics/btaa180.
DCHap: A divide-and-conquer haplotype phasing algorithm for third-generation sequencing data

Yanbo Li, and Yu Lin

The 18th Asia Pacific Bioinformatics Conference (APBC2020).
MetaBCC-LR: Metagenomics Binning by Coverageand Composition for Long Reads

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, and Yu Lin

The 28th Conference on Intelligent Systems for Molecular Biology (ISMB2020).
Modeling Dynamic Heterogeneous Network for Link Prediction using Hierarchical Attention with Temporal RNN

Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, and Yu Lin

The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD 2020).
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

Vijini Mallawaarachchi, Anuradha Wickramarachchi, and Yu Lin

The Workshop on Algorithms in Bioinformatics (WABI 2020).
Kmer2SNP: reference-free SNP calling from raw reads based on matching

Yanbo Li, Hardip Patel, and Yu Lin

International Conference on Bioinformatics and Biomedicine (BIBM 2020).
MultiTrans: a novel algorithm for transcriptome assembly through mixed integer linear programming

Jin Zhao, Haodi Feng, Daming Zhu, and Yu Lin

The 19th Asia Pacific Bioinformatics Conference (APBC2021).
GraphPlas: Refined Classification of Plasmid Sequences using Assembly Graphs

Anuradha Wickramarachchi and Yu Lin

The 19th Asia Pacific Bioinformatics Conference (APBC2021).
Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks

Hansheng Xue, Luwei Yang, Vaibhav Rajan, Wen Jiang, Yi Wei, and Yu Lin

The 30th International World Wide Web Conference (The Web Conf 2021).
Improving metagenomic binning results with overlapped bins using assembly graphs

Vijini Mallawaarachchi, Anuradha Wickramarachchi, and Yu Lin

Algorithms for Molecular Biology.