GraphBin: Refined Binning of Metagenomic Contigs using Assembly Graphs
Vijini Mallawaarachchi, Anuradha Wickramarachchi, and Yu LinBioinformatics, btaa180, https://doi.org/10.1093/bioinformatics/btaa180.
MetaBCC-LR: Metagenomics Binning by Coverageand Composition for Long Reads
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, and Yu LinThe 28th Conference on Intelligent Systems for Molecular Biology (ISMB2020).
Modeling Dynamic Heterogeneous Network for Link Prediction using Hierarchical Attention with Temporal RNN
Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, and Yu LinThe European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD 2020).
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
Vijini Mallawaarachchi, Anuradha Wickramarachchi, and Yu LinThe Workshop on Algorithms in Bioinformatics (WABI 2020).
MultiTrans: a novel algorithm for transcriptome assembly through mixed integer linear programming
Jin Zhao, Haodi Feng, Daming Zhu, and Yu LinThe 19th Asia Pacific Bioinformatics Conference (APBC2021).
Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks