A de novo assembler of long error-prone reads using repeat graphs.

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A binning tool for metagenomic contigs using assembly graphs.

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A new generation of GraphBin that supports overlapped binning of metagenomic contigs.

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Metagenomics binning by coverage and composition for long reads.

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Adaptation of contig based plasmid classification for error prone long reads to improved genome assembly.

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Reconstruct transcripts through a mixed integer linear programming on assembly or splicing graphs.

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A divide-and-conquer haplotype phasing algorithm for third-generation sequencing data.

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A reference-free and alignment-free variants calling tool for next-generation sequencing data.

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Bacterial whole cell typing by mass spectra with bootstrapping assessment.

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Bacterial mixture identification using MALDI-TOF mass spectrometry.

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Phylogeny reconstruction and ancestral inference from gene-order data.

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Phylogeny inference from rearrangement data with bootstrap analysis.

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A distance measure for phylogenetic trees based on matching.

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A dynamic heterogeneous representation learning method used for temporal link prediction.

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Multiplex bipartite network embedding using dual hypergraph convolutional networks.

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Constraint-based graph representation learning for metagenomic binning.

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Graph coloring via neural networks for haplotype phasing of polyploid species and viral quasispecies.

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Binning metagenomic contigs via composition, coverage and assembly graphs.

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De Novo Reconstruction of Viral Strains via Iterative Path Extraction From Assembly Graphs.

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